Clustering of Gene Sequences with an Unknown Number of Clusters

Student: Shokina Margarita

Faculty: HSE Tikhonov Moscow Institute of Electronics and Mathematics (MIEM HSE)

Educational Programme: Computer Systems and Networks (Master)

Final Grade: 9

Year of Graduation: 2017

This document is an explanatory note to the master’s final work on “Clustering of Gene Sequences with an Unknown Number of Clusters”. In this work was realized analysis of methods of HLA Typing and review of existing realizations of sequence clustering methods. It was the selection of methods for the realization of software for gene sequence clustering. Using the k-means ++, DBSCAN, and Spectral Clustering algorithms, clustering of sequences with an unknown number of clusters was performed.

Full text (added May 13, 2017)

Student Theses at HSE must be completed in accordance with the University Rules and regulations specified by each educational programme.

Summaries of all theses must be published and made freely available on the HSE website.

The full text of a thesis can be published in open access on the HSE website only if the authoring student (copyright holder) agrees, or, if the thesis was written by a team of students, if all the co-authors (copyright holders) agree. After a thesis is published on the HSE website, it obtains the status of an online publication.

Student theses are objects of copyright and their use is subject to limitations in accordance with the Russian Federation’s law on intellectual property.

In the event that a thesis is quoted or otherwise used, reference to the author’s name and the source of quotation is required.

Search all student theses