Антонов Иван Валентинович

Публикации¹⁷

• Статья Kuznetsov S., Milenkin A., Antonov I. Translational Frameshifting in the chlD Gene Gives a Clue to the Coevolution of the Chlorophyll and Cobalamin Biosyntheses // Microorganisms. 2022. Vol. 10. No. 6. Article 1200. doi
• Глава книги Antonov I. Two Cobalt Chelatase Subunits Can Be Generated from a Single chlD Gene via Programed Frameshifting, in: Proceedings of 10th Moscow Conference on Computational Molecular Biology MCCMB'21. M. : IITP RAS, 2021. Ch. 11.
• Статья Antonov I., Medvedeva Y. Direct interactions with nascent transcripts is potentially a common targeting mechanism of long non-coding rnas // Genes. 2020. Vol. 11. No. 12. P. 1-11. doi
• Статья Ramilowski J., Yip C. W., Agrawal S., Antonov I., Medvedeva Y., Carninci P. Functional annotation of human long noncoding RNAs via molecular phenotyping // Genome Research. 2020. Vol. 30. No. 7. P. 1060-1072. doi
• Статья Matveishina E., Antonov I., Medvedeva Y. Practical Guidance in Genome-Wide RNA:DNA Triple Helix Prediction // International Journal of Molecular Sciences. 2020. Vol. 21. No. 3. Article 830. doi
• Статья Antonov I. Two Cobalt Chelatase Subunits Can Be Generated from a Single chlD Gene via Programed Frameshifting // Molecular Biology and Evolution. 2020. Vol. 37. No. 8. P. 2268-2278. doi
• Статья Antonov I., Mazurov E., Borodovsky M., Medvedeva Y. Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools // Briefings in Bioinformatics. 2019. Vol. 2. No. 20. P. 551-564. doi
• Статья Antonov I., Medvedeva Y. Purine-rich low complexity regions are potential RNA binding hubs in the human genome // F1000Research. 2019. Vol. 7. No. 9. Article 76. doi
• Статья Antonov I., Marakhonov A., Zamkova M., Medvedeva Y. ASSA: Fast identification of statistically significant interactions between long RNAs // Journal of Bioinformatics and Computational Biology. 2018. Vol. 16. No. 1. Article 1840001. doi
• Статья Marakhonov A., Sadovskaya N., Antonov I., Baranova A., Skoblov M. Analysis of discordant Affymetrix probesets casts serious doubt on idea of microarray data reutilization // BMC Genomics. 2014. Vol. 15. No. 12. P. 1-15. doi
• Статья Antonov I., Baranov P., Borodovsky M. GeneTack database: Genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences // Nucleic Acids Research. 2013. Vol. 41. No. D1. P. 152-156. doi
• Статья Antonov I., Coakley A., Atkins J., Baranov P., Borodovsky M. Identification of the nature of reading frame transitions observed in prokaryotic genomes // Nucleic Acids Research. 2013. Vol. 41. No. 13. P. 6514-6530. doi
• Статья Tang S., Antonov I., Borodovsky M. MetaGeneTack: Ab initio detection of frameshifts in metagenomic sequences // Bioinformatics. 2013. Vol. 29. No. 1. P. 114-116. doi
• Статья Sharma V., Firth A., Antonov I., Fayet O., Atkins J., Borodovsky M., Baranov P. A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment // Molecular Biology and Evolution. 2011. Vol. 28. No. 11. P. 3195-3211. doi
• Статья Xu J., Linning R., Antonov I., Borodovsky M., Saville B., Bakkeren G. Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn smut fungi // BMC Genomics. 2011. Vol. 12. No. 24. Article 161. doi
• Статья Jordan K., Conley A., Antonov I., Mayer L. Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus // Journal of Bacteriology. 2011. Vol. 193. No. 20. P. 5879-5880. doi
• Статья Antonov I., Borodovsky M. GeneTack: Frameshift identification in protein-coding sequences by the viterbi algorithm // Journal of Bioinformatics and Computational Biology. 2010. Vol. 8. No. 3. P. 535-551. doi